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Submissions from 2012

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An Open-Source Sandbox for Increasing the Accessibility of Functional Programming to the Bioinformatics and Scientific Communities, Matthew Fenwick, Colbert Sesanker, Jay Vyas, and Michael R. Gryk

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High Serum Cu and Cu/Zn Ratios Correlate with Impairments in Bone Density, Physical Performance and Overall Health in a Population of Elderly Men With Frailty Characteristics, Eric D. Gaier, Alison Kleppinger, Richard E. Mains, Anne M. Kenny, and Betty A. Eipper

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The CCL2 Synthesis Inhibitor Bindarit Targets Cells of the Neurovascular Unit, and Suppresses Experimental Autoimmune Encephalomyelitis, Shujun Ge, Bandana Shrestha, Debayon Paul, Robert E. Cone, and Joel S. Pachter

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Electrophysiological Responses to Threat in Youth with and without Posttraumatic Stress Disorder, Damion J. Grasso

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Global Patterns of Tissue-Specific Alternative Polyadenylation in Drosophila, Brenton R. Graveley, Gemma May, and Michael O. Duff

Secondary Structure, a Missing Component of Sequence-Based Minimotif Definitions, Michael R. Gryk, Mark W. Maciejewski, Vishal Thapar, Vamsi Kundeti, and Sanguthevar Rajasekaran

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Determining the Functional Significance of Mismatch Repair Gene Missense Variants Using Biochemical and Cellular Assays, Christopher D. Heinen

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Family-based Genome-wide Association Study of Frontal Theta Oscillations Identifies Potassium Channel Gene KCNJ6, Victor M. Hesselbrock

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Defining the Developmental Parameters of Temper Loss in Early Childhood: Implications for Developmental Psychopathology, Heide Hullsiek and Margaret J. Briggs-Gowan

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Interleukin-1β in Central Nervous System Injury and Repair, Nicole A. Jackman, Sandra J. Hewett, and Robert J. Claycomb

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Distinct Mechanisms Mediate Naïve and memory CD8 T-cell tolerance, Evan R. Jellison, Elizabeth G. Lingenheld, Li Zu, Lynn Puddington, and Leo Lefrancois

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B Cells, Not Just for Antibody Anymore: The Latest Regulators of Innate Immunity, Kamal M. Khanna and Leo Lefrancois

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Are Baby Boomers Who Care for their Older Parents Planning for their Own Future Long-Term Care Needs?, Alison Kleppinger and Julie T. Robison

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Approaches to the Study of Neural Coding of Sound Source Location and Sound Envelope in Real Environments, Shigeyuki Kuwada, Brian Bishop, and Duck O. Kim

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Multivitamin Therapy for Recurrent Aphthous Stomatitis, Rajesh V. Lalla, Linda E. Choquette, Richard S. Feinn, Harriet Zawistowski, Marie C. Latortue, and Edward T. Kelly

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Crawling Cells Can Close Wounds without Purse Strings or Signaling, Pilhwa Lee and Charles W. Wolgemuth

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The Role of IFNAR and MyD88 Signaling in Induction of IL-15 Expression In Vivo, Leo Lefrancois, Sara L. Colpitts, Thomas A. Stoklasek, Courtney R. Plumlee, and Joshua J. Obar

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Pharmacological and Therapeutic Effects of A3 Adenosine Receptor (A3AR) Agonists, Bruce T. Liang

Gbx2 Plays an Essential but Transient Role in the Formation of Thalamic Nuclei, Kairong Li and James Y. H. Li

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Loss of Vascular Early Response Gene Reduces Edema Formation After Experimental Stroke, Fudong Liu, L C. Turtzo, Jun Li, Neer Zeevi, and Louise D. McCullough

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One-step Derivation of Mesenchymal Stem Cell (MSC)-like Cells From Human Pluripotent Stem Cells on a Fibrillar Collagen Coating, Yongxing Liu, A. Jon Goldberg, Gloria A. Gronowicz, and Liisa T. Kuhn

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Computational Analysis of Calcium Signaling and Membrane Electrophysiology in Cerebellar Purkinje Neurons Associated With Ataxia, Leslie M. Loew and Sherry-Ann Brown

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Simultaneous Measurement and Modulation of Multiple Physiological Parameters in the Isolated Heart Using Optical Techniques, Leslie M. Loew and Ping Yan

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Deciphering Phosphotyrosine-Dependent Signaling Networks in Cancer by SH2 Profiling, Kazuya Machida

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Kalirin, a Key Player in Synapse Formation, Is Implicated in Human Diseases, Prashant Mandela and Xin-Ming Ma

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Bone-specific Overexpression of NPY Modulates Osteogenesis, I Matic, B G. Matthews, T Kizivat, J C. Igwe, D J. Adams, and Ivo Kalajzic

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Upregulation of Fibronectin and the α5β1 and αvβ3 Integrins on Blood Vessels within the Cerebral Ischemic Penumbra, Louise D. McCullough and Fudong Liu

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Effects of Chronic and Acute Oestrogen Replacement Therapy in Aged Animals after Experimental Stroke, Louise D. McCullough, Fudong Liu, S. E. Benashski, and M. Siegel

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Genomic Analysis of Pterostilbene Predicts Its Antiproliferative Effects Against Pancreatic Cancer In Vitro and In Vivo, David W. McFadden

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Cytochrome b5 and Cytokeratin 17 Are Biomarkers in Bronchoalveolar Fluid Signifying Onset of Acute Lung Injury, Antoine Ménoret, Sanjeev Kumar, and Anthony T. Vella

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Achieving High Accuracy Prediction of Minimotifs, Tian Mi, Sanguthevar Rajasekaran, Jerlin C. Merlin, and Michael R. Gryk

Leveraging Modeling Approaches: Reaction Networks and Rules, Ion I. Moraru and Michael L. Blinov

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Active Induction of Experimental Autoimmune Encephalomyelitis by MOG35-55 Peptide Immunization is Associated with Differential Responses in Separate Compartments of the Choroid Plexus, Nivetha Murugesan, Debayon Paul, Yen Lemire, Bandana Shrestha, Shujun Ge, and Joel S. Pachter

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Fast rebinding increases dwell time of Src homology 2 (SH2)-containing proteins near the plasma membrane, Dongmyung Oh, Mari Ogiue-Ikeda, Joshua A. Jadwin, Kazuya Machida, Bruce J. Mayer, and Ji Yu

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Essential Features and Rational Design of CRISPR RNAs That Function With the Cas RAMP Module Complex to Cleave RNAs, Sara Olson, Alissa M. Resch, and Brenton R. Graveley

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Spontaneous Spheroid Budding From Monolayers: A Potential Contribution to Ovarian Cancer Dissemination, Jillian C. Pease, Molly Brewer, and Jennifer S. Tirnauer

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In vivo Fate Mapping identifies Mesenchymal Progenitor Cells, Slavica Pejda, Brya G. Matthews, Dario Repic, Liping Wang, Haitao Li, Mark S. Kronenberg, Xi Jiang, Peter Maye, Douglas J. Adams, David W. Rowe, Hector L. Aguila, and Ivo Kalajzic

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Contingency Management Delivered by Community Therapists in Outpatient Settings, Nancy M. Petry and Sheila M. Alessi

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The Impact of Contingency Management on Quality of Life Among Cocaine Abusers With and Without Alcohol Dependence, Nancy M. Petry, Sheila M. Alessi, and Leonardo F. Andrade

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Of Ticks, Mice and Men: Understanding the Dual-host Lifestyle of Lyme Disease Spirochaetes, Justin D. Radolf and Melissa J. Caimano

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Identifying Provider Beliefs Related to Contingency Management Adoption Using the Contingency Management Beliefs Questionnaire, Carla J. Rash and Nancy M. Petry

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Transcriptome Analysis Reveals Strain-Specific and Conserved Stemness Genes in Schmidtea Mediterranea, Alissa M. Resch, Michael Horowitz, and Brenton R. Graveley

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A gutsy way to extend longevity, Ryan P. Rogers and Blanka Rogina

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A Bayesian Approach to Pathway Analysis by Integrating Gene–Gene Functional Directions and Microarray Data, David W. Rowe, Yifang Zhao, Ming-Hui Chen, Dong-Guk Shin, and Lynn Kuo

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High Sensitivity Carbon Nanotube Based Electrochemiluminescence Sensor Array, James F. Rusling

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Nanomaterials-Based Electrochemical Immunosensors for Proteins, James F. Rusling

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Long Distance Electron Transfer Across >100 nm Thick Au Nanoparticle/Polyion Films to a Surface Redox Protein, James F. Rusling, Hongyun Liu, Yasemin Kutes, and Bryan D. Huey

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Reaction-diffusion Modeling in the NEURON Simulator, James C. Schaff

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Virtual Cell: Computational Tools for Modeling in Cell Biology, James C. Schaff, Boris M. Slepchenko, Diana C. Resasco, Fei Gao, Frank Morgan, and Igor L. Novak

The HSV-1 Exonuclease, UL12, Stimulates Recombination by a Single Strand Annealing Mechanism, April J. Schumacher, Kareem N. Mohni, and Sandra K. Weller

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LC-MS/MS Identification of a Bromelain Peptide Biomarker from Ananas comosus Merr, Eric R. Secor, Steven M. Szczepanek, Linda Guernsey, Prabitha Natarajan, Karim Rezaul, David K. Han, Roger S. Thrall, and Lawrence K. Silbart

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Bevacizumab and Breast Cancer: What Does the Future Hold?, Christina E. Stevenson

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Fabrication of Immunosensor Microwell Arrays From Gold Compact Discs for Detection of Cancer Biomarker Proteins, Chi K. Tang, Abhay Vaze, and James F. Rusling

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Is it the Exception or the Rule? Daily Co-Occurrence of Physical, Sexual, and Psychological Partner Violence in a 90-Day Study of Substance-Using, Community Women, Howard A. Tennen

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Risk Factors for Alcohol Problems in Victims of Partner Violence, Howard A. Tennen

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NF-κB Contributes to the Detrimental Effects of Social Isolation After Experimental Stroke, Venugopal Reddy Venna, Gillian Weston, Sharon E. Benashski, Sami Tarabishy, Fudong Liu, Jun Li, Lisa H. Conti, and Louise D. McCullough

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Swimming Dynamics of the Lyme Disease Spirochete, Dhruv K. Vig and Charles W. Wolgemuth

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Herpes Simplex Viruses: Mechanisms of DNA Replication, Sandra K. Weller

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Model Selection for Cox Models with Time-Varying Coefficients, Jun Yan

Submissions from 2011

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Tumor Recognition and Self-Recognition Induce Distinct Transcriptional Profiles in Antigen-Specific CD4 T Cells, Adam J. Adler

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Phagosomal Signaling by Borrelia Burgdorferi in Human Monocytes Involves Toll-like Receptor (TLR) 2 and TLR8 Cooperativity and TLR8-mediated Induction of IFN-β, Jorge L. Cervantes, Star M. Dunham-Ems, Carson J. La Vake, Mary M. Petzke, Justin D. Radolf, and Juan C. Salazar

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T Cells Expanded in Presence of IL-15 Exhibit Increased Antioxidant Capacity And Innate Effector Molecules, Nitya G. Chakraborty and Bijay Mukherji

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Inhibitory Activities of Omega-3 Fatty Acids and Traditional African Remedies on Keloid Fibroblasts, I-Ping Chen, Richard S. Feinn, and Ernst J. Reichenberger

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Sex Differences in Chondrocyte Maturation in the Mandibular Condyle from a Decreased Occlusal Loading Model, J. Chen, Takanori Sobue, Achint Utreja, Zana Kalajzic, Sunil Wadhwa, and M. Xu

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In Translation v.1:no.3 (2011:Spring), Matthew J. Cook

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In Translation v.2:no.1 (2011:Summer), Matthew J. Cook

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In Translation v.2:no.2 (2011:Fall/Winter), Matthew J. Cook

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Affiliation Goals and Health Behaviors, Jerry Cullum, Megan O’Grady, and Howard A. Tennen

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Up-Regulated Dicer Expression in Patients with Cutaneous Melanoma, Soheil S. Dadras, Elizabeth Fleming, and Helen Swede

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The Impaired Bone Anabolic Effect of PTH in the Absence of Endogenous FGF2 is Partially Due to Reduced ATF4 Expression, Yurong Fei, Liping Xiao, and Marja M. Hurley

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Identification of Three Prominin Homologs and Characterization of Their Messenger RNA Expression in Xenopus Laevis Tissues, Zhou Han and David S. Papermaster

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Experiences of Participants in a Collaborative to Develop Performance Measures for Hospice Care, Meliessa Hennessy

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Loss of DNA Mismatch Repair Imparts a Selective Advantage in Planarian Adult Stem Cells, Jessica P. Hollenbach, Alissa M. Resch, Dasaradhi Palakodeti, Brenton R. Graveley, and Christopher D. Heinen

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Keratocan Is Expressed By Osteoblasts And Can Modulate Osteogenic Differentiation, John C. Igwe, Qi Gao, Tomislav Kizivat, and Ivo Kalajzic

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Dietary Protein and Skeletal Health: A Review of Recent Human Research, Jane E. Kerstette and Anne M. Kenny

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Imaging—and Imagining—Immune Responses to Infections, Kamal M. Khanna and Leo Lefrancois

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A Methodology for Building Culture and Gender Norms Into Intervention: An Example From Mumbai, India, Kristin M. Kostick,; Stephen L. Schensul; and Pertti Pelto

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Potential Pathophysiological Mechanisms in Osteonecrosis of the Jaw, Regina L. Landesberg

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Mold and Alternaria Skin Test Reactivity and Asthma in Children in Connecticut, Todd W. Lyons, Dorothy B. Wakefield, and Michelle M. Cloutier

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Neuronal Growth Cone Retraction Relies Upon Proneurotrophin Receptor Signaling Through Rac, Richard E. Mains and Betty A. Eipper

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Kalrn Promoter Usage And Isoform Expression Respond To Chronic Cocaine Exposure, Richard E. Mains, Drew D. Kiraly, Jodi E. Eipper-Mains, Xin-Ming Ma, and Betty A. Eipper

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Calcium Intake in the United States from Dietary and Supplemental Sources across Adult Age Groups: New Estimates from the National Health and Nutrition Examination Survey 2003–2006, Kelsey M. Mangano, Stephen J. Walsh, Anne M. Kenny, and Jane E. Kerstetter

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Generation and Characterization of Col10a1 -mCherry Reporter Mice, Peter Maye, Yu Fu, Yaling Liu, Mary Louise Stover, Xi Jiang, and David W. Rowe

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Phosphorylation of Crk on tyrosine 251 in the RT loop of the SH3C domain promotes Abl kinase transactivation, Bruce J. Mayer and Kazuya Machida

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The Branched Actin Nucleator Arp2/3 Promotes Nuclear Migrations and Cell Polarity in the C. Elegans Zygote, William A. Mohler

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Spontaneous Electrical Activity in the Human Fetal Cortex in vitro, Anna R. Moore, Wen-Liang Zhou, Igor Jakovcevski, Nada Zecevic, and Srdjan D. Antic

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Occupational Disease in Connecticut 2011, Tim Morse and Paula Schenck

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Immunogenicity and Smoking Cessation Outcomes for a Novel Nicotine Immunotherapeutic, Cheryl A. Oncken

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Associations of Ionizing Radiation and Breast Cancer-Related Serum Hormone and Growth Factor Levels in Cancer-Free Female A-Bomb Survivors, Richard G. Stevens

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Division of Labor Between Subsets of Lymph Node Dendritic Cells Determines the Specificity of the CD8 Recall Response to Influenza Infection, Jenny E. Suárez-Ramírez, Tao Wu, Young-Tae Lee, Carolina C. Aguila, Keith R. Bouchard, and Linda Linda Cauley

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Prevalence and Prognostic Role of Triple-Negative Breast Cancer by Race: A Surveillance Study, Helen Swede, David I. Gregorio, Susan H. Tannenbaum, Jessica A. Brockmeyer, Lori L. Wilson, Mellisa A. Pensa, Richard G. Stevens, and Carolyn D. Runowicz

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Modulation of Fibroblast Inflammatory Response by Surface Modification of a Perfluorinated Ionomer, Thelma Iris Valdes

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Beliefs about Racism and Health among African American Women with Diabetes: A Qualitative Study, Julie A. Wagner, Lisa M. Budris, Sophia Belay, and Howard A. Tennen

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MEKK3 Regulates IFN-γ Production in T Cells through the Rac1/2-Dependent MAPK Cascades, Xiaofang Wang

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Early Postoperative Serum Cystatin C Predicts Severe Acute Kidney Injury Following Pediatric Cardiac Surgery, Zhu Wang

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Phosphatidylinositol 4,5-bisphosphate (PIP2) controls magnesium gatekeeper TRPM6 activity, Jia Xie, Baonan Sun, Jianyang Du, Wenzhong Yang, and Lixia Yue

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Racial and Ethnic Group Variations in Service Use in a National Sample of Medicare Home Health Care Patients with Type 2 Diabetes Mellitus, Amoah Yeboah-Korang, Alison Kleppinger, and Richard H. Fortinsky

Submissions from 2010

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The Decade of the Dendritic NMDA Spike, Srdjan D. Antic, Wen-Liang Zho, Anna R. Moore, Shaina M. Shor, and Katerina D. Ikonomu

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Characterization of Stem and Progenitor Cells in the Dental Pulp of Erupted and Unerupted Murine Molars, Anamaria Balic, Hector L. Aguila, Melissa J. Caimano, Victor P. Francone, and Mina Mina

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A Detailed Mathematical Model Predicts Serial Engagement of IgE-FcεRI Complexes Can Enhance Syk Activation in Mast Cells, Michael L. Blinov